Chapter 10 Install & Update R Packages
In this chapter, we will learn about R packages. Packages are fundamental to R. There are approximately 15000 packages available on CRAN or the Comprehensive R Archive Network.
Packages are available for different topics. You should always look for a package before writing code from scratch. In case you have written your own codes for a new analysis or topic, do share it with the R community by converting the code into a package. You can learn more about building R packages from R Packages, a book written by Hadley Wickham.
In this chapter, we will learn to:
- install R packages from
- install different versions of a package
- load, update & remove installed packages
- access package documentation
10.2 Install Packages
Packages from CRAN can be installed using
install.packages(). The name of the package must be enclosed in single or double quotes.
Some R packages are made available on GitHub before releasing them on CRAN. Such packages can be installed using
install_github() from devtools or remotes package. You need tp specify the name of the repository and the package. For example, to download ggplot2 or dplyr, below is the code:
Bitbucket is similar to GitHub. You can install packages from Bitbucket using
install_bitbucket() from devtools or remotes pacakge.
Bioconductor provides tools for analysis and comprehension of high throughput genomic data. Packages hosted on Bioconductor can be installed in multiple ways:
install_bioc() from devtools.
Many R packages are hosted at R-Forge, a platform for development of R packages.
install.packages('quantstrat', repos = 'https://r-forge.r-project.org/')
10.3 Install Different Versions
Now that we have learnt how to install packages, let us look at installing different versions of the same package.
::install_version('dplyr', version = 0.5.0)remotes
If you want to install the latest release from GitHub, append
@*release to the repository name. For example, to install the latest release of dplyr:
10.4 Installed Packages
installed.packages(): view currently installed packages
library('package_name'): load packages
autoload('function_name', 'package_name'): load functions and data from packages only when called in the script
available.package(): packages available for installation
old.packages(): packages which have new versions available
new.packages(): packages already not installed
update.packages(): update packages which have new versions
remove.packages('package_name'): remove installed packages
10.5 Library Paths
Library is a directory that contains all installed packages. Usually there will be more than one R library in your systme. You can find the location of the libraries using
##  "C:/Users/HP/Documents/R/win-library" "C:/Program Files/R/R-4.1.0/library"
You can use
lib.loc when you want to install, load, update and remove packages from a particular library.
install.packages('stringr', lib.loc = "C:/Program Files/R/R-3.4.1/library")
library(lubridate, lib.loc = "C:/Program Files/R/R-3.4.1/library")
10.5.3 Update Packages
update.packages(lib.loc = "C:/Program Files/R/R-3.4.1/library")
10.5.4 Remove Packages
remove.packages(lib.loc = "C:/Program Files/R/R-3.4.1/library")